| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 129.0 |
| Annotation | |
| Source Name | eme10H05 |
| Source Type | genomic |
| Source Sequence | CCCAAGTACAAGACGAAAGTGTGCAGACCAGAACCTTTAA GAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAA AGATGAATGAGGAATAACAAAAATATAATTGAGAGTAAAA TAAATCGCAACTGTAATTACCACCAATGTCACTTCCAGAA AATTCTATAAATAATAAAACTTTCAAAAACCAGCAATAGA GTAGTAATATTCTGTTGAGAAAGATTAGGTTAAGGGACCA GAACCAAAATGATTTAAAAGCTAAACTGCACGGACTCTTC ACTTTCAATGCCGCACCCGTGTTAGATTCTTCGAAAATAC ACTACTTTGGGCGAATCCGACACGCACCCACACTTTTAAA GAGTCCGAGCAACATAGCTTAAAAGTGCAAATATGATCTC TCTAATAAAGAAAGCTCATCCAAAATTATTCTAATATAAT GATCCTTATTCTGCACCAAACATGATTTCAACGGAGAAAA CACCCAAACAGTAAATTCAGTTAAGATGCTTGCTTAGTAT CTTGCCTCAAATAGTCAGAATATGAGTGTCCTGCCTCATG ACTGAATGTGATAACATTTTGATTATCATGCAAAACATTC ACCAGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)16 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme10H05/U |
| fwd primer seq. | acaagacgaaagtgtgcagaccag |
| rev primer | eme10H05/L |
| rev primer seq. | ttgaaagtgaagagtccgtgcagt |
| fluor. primer | eme10H05/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-ACAAGACGAAAGTGTGCAGACCAG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 283 | 283 |
| EPL-1 | 279 | 279 |
| LS1151 (S.linneanum) | 257 | 257 |
| LS1934 | 279 | 279 |
| LS4021 (S. incanum) | 267 | 267 |
| Nakate Shinkuro | 279 | 279 |
| Senryo 2 | 279 | 279 |
| Shironasu | 284 | 284 |
| WCGR112-8 | 283 | 283 |
| White Egg | 284 | 284 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 123.4 |
| ALF2 | AL01 | 109.9 |
| EW2009 | LG03 | 35.3 |
| LW2010 | E_01 | 129.0 |
| LWA2010 | LWA_01 | 106.369 |
| LWAE2012 | E_01 | 107.07 |
| LWF2_2022 | E_01 | 58.0 |
| NAF2 | NA01 | 99.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0127P18_SP6_332902 Chromat_file:SL_EcoRI_127_P18-SP6 SGN_GSS_ID:349728 (vector and quality trimmed) | 7e-24 |
| TomatoBAC_end | BLASTN | SL_EcoRI0004J02_SP6_288967 Chromat_file:SL_EcoRI_004_J02-SP6 SGN_GSS_ID:305793 (vector and quality trimmed) | 7e-24 |
| TomatoBAC_end | BLASTN | LE_HBa0135L12_SP6_61606 Chromat_file:LE_HBa_135_L12-SP6 SGN_GSS_ID:61606 (vector and quality trimmed) | 7e-24 |
| TomatoBAC_end | BLASTN | LE_HBa0005F04_SP6_1782 Chromat_file:LE_HBa_005_F04-SP6 SGN_GSS_ID:1782 (vector and quality trimmed) | 7e-24 |
| TomatoBAC_end | BLASTN | LE_HBa0097I09_T7_29969 Chromat_file:LE_HBa_097_I09-T7 SGN_GSS_ID:29969 (vector and quality trimmed) | 2e-21 |
| EST Name | Species | Strain |
|---|
