| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 48.3 |
| Annotation | |
| Source Name | emf11O07 |
| Source Type | genomic |
| Source Sequence | CTATCCACAATCAACGTCGTTTATCCCAATGAACGAAACT TTTTTATTATCCGTAAAAGTAACAATTCATTTTTAGATAG AAGTTTCACGATAAAATACAAAAGAAATGTTGAATATATA TGTAAATTGACTTTATCTATTAGTGACGCATTTTAAAGTT GTACGAGCCTAGACTTAAAACGGCCACTATCATTAGCGAA TTAGCGGATTGAGTCATTACAGAATTTTCGTAGCTACTAA GGGGACCTTAAATAGAAGATTTGCAATATCAAGATGATTT GGAAGAGAAGAACAATAAATCTCAAAATTTCTTGGCCAAA AACCATATACTCTTGAAGGTTGGTCTTCACTTGAGAGAAA GAGAATTTCTTGGCTAAGTGTAGAGATGAAGATTTAATGC AGTCTTATACACACACACACACACACAAACACACATACAC ACACACACACACACATACACACACACACACACACATATAT ATATATATATATATATATATTTTTATTTCTTAAAAACTTG GTCAAAATAAATGGTCTACCCACATACTTGGACCAATAAG AAAATAACACCAAGCCAAGAAGGTTCTCAAAAATATCTTC AAGAACTCAAGTCTTAAAAATTATACTTTGGTCACAAAAC TTTCCAATAATGACACTTTAATCCCCAATTTCCGTAATTA TTCCAACACAAAAAATACGAGTTCTAACAAGAAGCTATGG TACTTTTATGTGGAGAAAAGGGTGGATGACTGGGCCCATC ATCCTAAGTTTTGAAGGCTCCAGTTGGCCCAAAAGGTTGG CTCCCAACGATTTTCTCAGTCATCGAAAAATATTCTTGTA TGTACTAATATGAATTTTCTTCTTTCTGAGGTTCGACAAT AAAATATGACCTTGTCCAAGTTGTTACTTGTAATTTGTCT ATCAGAAGGCTTCTGCTAGCAAGGCCTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)9aa(ac)3at(ac)9at(ac)9a(ta)12 |
|---|---|
| PCR product (bp) | 263 |
| fwd primer | emf11O07/U |
| fwd primer seq. | tcttgaaggttggtcttcacttgag |
| rev primer | emf11O07/L |
| rev primer seq. | tttttgagaaccttcttggcttgg |
| fluor. primer | emf11O07/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acttgaaggttggtcttcacttgag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 259 | 259 |
| EPL-1 | 265 | 265 |
| LS1151 (S.linneanum) | 233 | 233 |
| LS1934 | 265 | 265 |
| LS4021 (S. incanum) | 252 | 254 |
| Nakate Shinkuro | 264 | 264 |
| Senryo 2 | 263 | 265 |
| Shironasu | 263 | 263 |
| WCGR112-8 | 263 | 263 |
| White Egg | 265 | 265 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 51.1 |
| EW2009 | LG03 | 107.4 |
| LW2010 | E_01 | 48.3 |
| LWA2010 | LWA_01 | 42.811 |
| LWAE2012 | E_01 | 46.609 |
| LWF2_2022 | E_01 | 146.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
