| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 48.3 |
| Annotation | |
| Source Name | emf21E20 |
| Source Type | genomic |
| Source Sequence | CAGAAAGCCTCGCCACATGCCACACATCGTTGCTGGTATT GCCGCTGCCTTCCACCCGGAGGTAGAATAACATTTCTGAT GGCAACATTTTTATTACACTGGTGCTTGTCTTGCACTATC TTTTAACTATCCTGATGCTATATTAAGATGGGTTTATGTT ATGCTTGTTCTTGTGAAGGAACCTTTGCTAAATGGAGTTG CACCTGGAGCACAAATTGTGTCTTGTAAAATTGGGGATTC ACGGTTAGGTTCTATGGAAACAGGAACTGGTTTGACTAGG GCCTTGATTGCAGCTAAATTTATTTTTAAAATTCCAAAAT TCTCTATTCTTACCAGAGTTTGCATTATTGTAAGTTGTAA AGACAATATCCTTTCCTGTGGCTCAGACTTAACTTATTCC CTTTTATCACCTTGAAAAATTGTTGGGCTTTGACGTCCAT ATATCGAAGAACACACGCACACATACACACACACACACAC ATATACACACACACACACACACACACACACACACACACAC ATATATATATATATCATATCACATGGACATAATCATTATC ACCGCTCTCAAACCCAAGTAACATATTCATATGCAACATC AAAATAATATTTATTCTAAATTTCATCAAAGATATGAGTT TTCGGGACAATTAGAACCCATAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (at)3cgaaga(ac)3g(ca)3t(ac)8atat(ac)18a(ta)6 |
|---|---|
| PCR product (bp) | 212 |
| fwd primer | emf21E20/U |
| fwd primer seq. | caatatcctttcctgtggctcaga |
| rev primer | emf21E20/L |
| rev primer seq. | gggtttgagagcggtgataatga |
| fluor. primer | emf21E20/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atatatcctttcctgtggctcaga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 214 | 214 |
| EPL-1 | 214 | 214 |
| LS1151 (S.linneanum) | 210 | 210 |
| LS1934 | 212 | 212 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 214 | 214 |
| Senryo 2 | 213 | 213 |
| Shironasu | 214 | 214 |
| WCGR112-8 | 214 | 214 |
| White Egg | 214 | 214 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 51.1 |
| LW2010 | E_01 | 48.3 |
| LWA2010 | LWA_01 | 42.799 |
| LWAE2012 | E_01 | 46.634 |
| LWF2_2022 | E_01 | 146.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
