| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 70.2 |
| Annotation | |
| Source Name | emg11M09 |
| Source Type | genomic |
| Source Sequence | CCACTGGGAGTCAACATTGAAATTGGCTGAGCTTGGATCT CTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTT GCAGTAATGGGAATTTTATGAATTGGAAAGTGAGAGTAGC ATGATATTATCATGAAAATGTCCTTTACTCCTTTAAAGGA TATAAACTGATGGGAAACAAGCTTTATTGTCTAATAGACT ACTTCATTTTGCCAAAGTTCTAGCGAAGATCCACCTAAAC TACTCAATTCTTTTTTTCTAGTTTAGTGGAGAATCTTCTG ACAGTAGTGGTTATTTGATCTCGTACTTGTTTGATCTGTA TCCAGATATTTATTAATTCCTTTTTTATTTGGGTCAAGAA TCTTCTACTAGTCCAGAAAGTTTCCAAACAGAAAAGTTTA GGGCATGAAGTACATTCTGTTTTCTGCACTATTGACTAGG TTAATTAAGCAATTATTGTACTTGTTCAATCTGCATTGAG ATAGTACGTTATCAGTTTTTGAGTCTTGAAAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)7tt(tc)31 |
|---|---|
| PCR product (bp) | 263 |
| fwd primer | emg11M09/U |
| fwd primer seq. | caacattgaaattggctgagcttg |
| rev primer | emg11M09/L |
| rev primer seq. | gtggatcttcgctagaactttggc |
| fluor. primer | emg11M09/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atacattgaaattggctgagcttg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 242 | 242 |
| EPL-1 | 268 | 268 |
| LS1151 (S.linneanum) | 218 | 218 |
| LS1934 | 286 | 286 |
| LS4021 (S. incanum) | 214 | 214 |
| Nakate Shinkuro | 266 | 266 |
| Senryo 2 | 266 | 266 |
| Shironasu | 292 | 292 |
| WCGR112-8 | 280 | 280 |
| White Egg | 296 | 296 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 73.8 |
| EW2009 | LG03 | 78.0 |
| LW2010 | E_01 | 70.2 |
| LWA2010 | LWA_01 | 61.394 |
| LWAE2012 | E_01 | 65.844 |
| LWF2_2022 | E_01 | 115.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
