| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 108.7 |
| Annotation | |
| Source Name | emh03G07 |
| Source Type | genomic |
| Source Sequence | AAGCCTTACTGACCATCTGGGGGATGCTAACATATCATGG AAGGAAAGAAATGCAAGATGTTTTGAAGGAAAAGCAGATA TACTATACAGAAAGATGCTTATGGGTTGTCTTTTTGGTGT AATCTTTAGGATGTCAAAGAAGATAATAATAGGTTGGTAG ATTTCCTCAACTCACTATATGGATAATTGTACAGAACGGT TACACTTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTTTTAGGTAGGAGGGTTCTGACTATATTAATGTA CTAGCACCAACTTGGTGCTAGTTTTTTTTCCAGTATCAAT ATATGCATTACTTAGGGGAGGGGGAGGAGGAGGGGAGTAA GATGCAATCTTTAGGATGAAAATGAGTTTCTGGTTGATTT GTCTTCCTCATTCTTTGCTTTTGCCACCAGGTACGATTTT TTAAACGTACAAATAGGCTT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)17 |
|---|---|
| PCR product (bp) | 274 |
| fwd primer | emh03G07/U |
| fwd primer seq. | tgcttatgggttgtctttttggtg |
| rev primer | emh03G07/L |
| rev primer seq. | gattgcatcttactcccctcctcc |
| fluor. primer | emh03G07/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agcttatgggttgtctttttggtg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 287 | 287 |
| EPL-1 | 277 | 277 |
| LS1151 (S.linneanum) | 259 | 259 |
| LS1934 | 277 | 277 |
| LS4021 (S. incanum) | 271 | 271 |
| Nakate Shinkuro | 275 | 275 |
| Senryo 2 | 274 | 274 |
| Shironasu | 287 | 287 |
| WCGR112-8 | 287 | 287 |
| White Egg | 277 | 277 |
| PI 286106 | 276 | 276 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 101.0 |
| ALF2 | AL01 | 92.2 |
| EW2009 | LG03 | 51.2 |
| LW2010 | E_01 | 108.7 |
| LWA2010 | LWA_01 | 88.51 |
| LWAE2012 | E_01 | 91.622 |
| LWF2_2022 | E_01 | 75.2 |
| N28F2 | E_01 | 43.2 |
| NAF2 | NA01 | 84.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0082D12_T7_21287 Chromat_file:LE_HBa_082_D12-T7 SGN_GSS_ID:21287 (vector and quality trimmed) | 1e-15 |
| TomatoBAC_end | BLASTN | LE_HBa0049I15_SP6_10012 Chromat_file:LE_HBa_049_I15-SP6 SGN_GSS_ID:10012 (vector and quality trimmed) | 7e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0203N10_T7_368503 Chromat_file:LE_HBa_203_N10-T7 SGN_GSS_ID:385714 (vector and quality trimmed) | 7e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0015F01_SP6_129637 Chromat_file:LE_HBa_015_F01-SP6 SGN_GSS_ID:146468 (vector and quality trimmed) | 7e-11 |
| TomatoBAC_end | BLASTN | LE_HBa0094F16_T7_27535 Chromat_file:LE_HBa_094_F16-T7 SGN_GSS_ID:27535 (vector and quality trimmed) | 7e-11 |
| EST Name | Species | Strain |
|---|
