| Crop | eggplant |
|---|---|
| Population | LW2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 49.0 |
| Annotation | |
| Source Name | emh05B02 |
| Source Type | genomic |
| Source Sequence | TCAATTATTGTGAAATATTATTCTTTTTGTAAATACTATT GTTACTTCTAGACTTCCTACAATTTATGCATAGACATAGT AATATACCAATATTAAGAAGGCAGCCTGCACAAGGAAAAA TAAATAGAACCAAAGACACGTTGGGATCATGCGTGAGTTT TGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGTAATATACCAATATTAAGAAAGCAGCCTGCA CAAAGAAAAATAAATAGAACGAAAGACTTGTTGGAGAGAG AGAGAGAGAGAGAGGGAAGGAGGGAGGGAGATGCTCTCCT AGAACCCAGTCAAAAGACAACCATCCGGCAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)43 |
|---|---|
| PCR product (bp) | 238 |
| fwd primer | emh05B02/U |
| fwd primer seq. | gaaccaaagacacgttgggatcat |
| rev primer | emh05B02/L |
| rev primer seq. | ttctaggagagcatctccctccct |
| fluor. primer | emh05B02/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ataccaaagacacgttgggatcat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 216 | 216 |
| EPL-1 | 229 | 229 |
| LS1151 (S.linneanum) | 210 | 210 |
| LS1934 | 258 | 258 |
| LS4021 (S. incanum) | 287 | 287 |
| Nakate Shinkuro | 233 | 233 |
| Senryo 2 | 229 | 229 |
| Shironasu | 235 | 235 |
| WCGR112-8 | 236 | 236 |
| White Egg | 240 | 240 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 51.6 |
| EW2009 | LG03 | 105.1 |
| LW2010 | E_01 | 49.0 |
| LWA2010 | LWA_01 | 43.533 |
| LWAE2012 | E_01 | 47.643 |
| LWF2_2022 | E_01 | 140.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
